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install_github not installing dependencies even with updated version of devtools #1298

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install_github not installing dependencies even with updated version of devtools#1298
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bugan unexpected problem or unintended behaviorinstall

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@charlottesirot
charlottesirot
opened on Aug 24, 2016

Dear developers,

I try to install my package (https://github.com/charlottesirot/elementR) from github on my win7 machine without success. I have the same issue than juliasilge/widyr#3 and #1265. So I tried with the new version of devtools but it seems not to work:

>devtools::install_github("hadley/devtools", force = T)
Downloading GitHub repo hadley/devtools@master
from URL https://api.github.com/repos/hadley/devtools/zipball/master
Installing devtools
"C:/PROGRA~1/R/R-33~1.1/bin/i386/R" --no-site-file --no-environ --no-save  \
  --no-restore --quiet CMD INSTALL  \
  "C:/Users/cha/AppData/Local/Temp/RtmpQ9I7QI/devtools24053e462ea/hadley-devtools-e6ad9b5"  \
  --library="C:/Users/cha/Documents/R/win-library/3.3" --install-tests 

* installing *source* package 'devtools' ...
** R
** inst
** tests
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
*** arch - i386
*** arch - x64
* DONE (devtools)
Reloading installed devtools
> install_github('Rstudio/DT')
Downloading GitHub repo Rstudio/DT@master
from URL https://api.github.com/repos/Rstudio/DT/zipball/master
Installing DT
"C:/PROGRA~1/R/R-33~1.1/bin/i386/R" --no-site-file --no-environ --no-save  \
  --no-restore --quiet CMD INSTALL  \
  "C:/Users/cha/AppData/Local/Temp/RtmpQ9I7QI/devtools24027754908/rstudio-DT-25d879b"  \
  --library="C:/Users/cha/Documents/R/win-library/3.3" --install-tests 

* installing *source* package 'DT' ...
** R
** inst
** preparing package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
  there is no package called 'Rcpp'
ERROR: lazy loading failed for package 'DT'
* removing 'C:/Users/cha/Documents/R/win-library/3.3/DT'
Error: Command failed (1)
> install_github('Rstudio/DT', dependencies = T)
Downloading GitHub repo Rstudio/DT@master
from URL https://api.github.com/repos/Rstudio/DT/zipball/master
Installing DT
"C:/PROGRA~1/R/R-33~1.1/bin/i386/R" --no-site-file --no-environ --no-save  \
  --no-restore --quiet CMD INSTALL  \
  "C:/Users/cha/AppData/Local/Temp/RtmpQ9I7QI/devtools240743c1947/rstudio-DT-25d879b"  \
  --library="C:/Users/cha/Documents/R/win-library/3.3" --install-tests 

* installing *source* package 'DT' ...
** R
** inst
** preparing package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
  there is no package called 'Rcpp'
ERROR: lazy loading failed for package 'DT'
* removing 'C:/Users/cha/Documents/R/win-library/3.3/DT'
Error: Command failed (1)
> library(devtools)
> install_github('Rstudio/DT', dependencies = T)
Downloading GitHub repo Rstudio/DT@master
from URL https://api.github.com/repos/Rstudio/DT/zipball/master
Installing DT
"C:/PROGRA~1/R/R-33~1.1/bin/i386/R" --no-site-file --no-environ --no-save  \
  --no-restore --quiet CMD INSTALL  \
  "C:/Users/cha/AppData/Local/Temp/RtmpQ9I7QI/devtools2403d75358c/rstudio-DT-25d879b"  \
  --library="C:/Users/cha/Documents/R/win-library/3.3" --install-tests 

* installing *source* package 'DT' ...
** R
** inst
** preparing package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
  there is no package called 'Rcpp'
ERROR: lazy loading failed for package 'DT'
* removing 'C:/Users/cha/Documents/R/win-library/3.3/DT'
Error: Command failed (1)

I don't understand why... Do I miss something ?
Sorry if this is a newbie question :S

Thank you very much in advance for your answer

cha

Activity

  1. jimhester commented on Aug 24, 2016

    @jimhester
    jimhester
    on Aug 24, 2016
    Member

    Try restarting the R session after installing devel devtools.

    On Aug 24, 2016 6:51 AM, "charlottesirot" notifications@github.com wrote:

    Dear developers,

    I try to install my package (https://github.com/charlottesirot/elementR)
    from github on my win7 machine without success. I have the same issue than
    juliasilge/widyr#3 juliasilge/widyr#3 and #1265
    #1265. So I tried with the new
    version of devtools but it seems not to work:

    devtools::install_github("hadley/devtools", force = T)
    Downloading GitHub repo hadley/devtools@master
    from URL https://api.github.com/repos/hadley/devtools/zipball/master
    Installing devtools
    "C:/PROGRA1/R/R-331.1/bin/i386/R" --no-site-file --no-environ --no-save
    --no-restore --quiet CMD INSTALL
    "C:/Users/cha/AppData/Local/Temp/RtmpQ9I7QI/devtools24053e462ea/hadley-devtools-e6ad9b5"
    --library="C:/Users/cha/Documents/R/win-library/3.3" --install-tests

    • installing source package 'devtools' ...
      ** R
      ** inst
      ** tests
      ** preparing package for lazy loading
      ** help
      *** installing help indices
      ** building package indices
      ** installing vignettes
      ** testing if installed package can be loaded
      *** arch - i386
      *** arch - x64

    • DONE (devtools)
      Reloading installed devtools

      install_github('Rstudio/DT')
      Downloading GitHub repo Rstudio/DT@master
      from URL https://api.github.com/repos/Rstudio/DT/zipball/master
      Installing DT
      "C:/PROGRA1/R/R-331.1/bin/i386/R" --no-site-file --no-environ --no-save
      --no-restore --quiet CMD INSTALL
      "C:/Users/cha/AppData/Local/Temp/RtmpQ9I7QI/devtools24027754908/rstudio-DT-25d879b"
      --library="C:/Users/cha/Documents/R/win-library/3.3" --install-tests

    • installing source package 'DT' ...
      ** R
      ** inst
      ** preparing package for lazy loading
      Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
      there is no package called 'Rcpp'
      ERROR: lazy loading failed for package 'DT'

    • removing 'C:/Users/cha/Documents/R/win-library/3.3/DT'
      Error: Command failed (1)

      install_github('Rstudio/DT', dependencies = T)
      Downloading GitHub repo Rstudio/DT@master
      from URL https://api.github.com/repos/Rstudio/DT/zipball/master
      Installing DT
      "C:/PROGRA1/R/R-331.1/bin/i386/R" --no-site-file --no-environ --no-save
      --no-restore --quiet CMD INSTALL
      "C:/Users/cha/AppData/Local/Temp/RtmpQ9I7QI/devtools240743c1947/rstudio-DT-25d879b"
      --library="C:/Users/cha/Documents/R/win-library/3.3" --install-tests

    • installing source package 'DT' ...
      ** R
      ** inst
      ** preparing package for lazy loading
      Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
      there is no package called 'Rcpp'
      ERROR: lazy loading failed for package 'DT'

    • removing 'C:/Users/cha/Documents/R/win-library/3.3/DT'
      Error: Command failed (1)

      library(devtools)
      install_github('Rstudio/DT', dependencies = T)
      Downloading GitHub repo Rstudio/DT@master
      from URL https://api.github.com/repos/Rstudio/DT/zipball/master
      Installing DT
      "C:/PROGRA1/R/R-331.1/bin/i386/R" --no-site-file --no-environ --no-save
      --no-restore --quiet CMD INSTALL
      "C:/Users/cha/AppData/Local/Temp/RtmpQ9I7QI/devtools2403d75358c/rstudio-DT-25d879b"
      --library="C:/Users/cha/Documents/R/win-library/3.3" --install-tests

    • installing source package 'DT' ...
      ** R
      ** inst
      ** preparing package for lazy loading
      Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
      there is no package called 'Rcpp'
      ERROR: lazy loading failed for package 'DT'

    • removing 'C:/Users/cha/Documents/R/win-library/3.3/DT'
      Error: Command failed (1)

    I don't understand why... Do I miss something ?
    Sorry if this is a newbie question :S

    Thank you very much in advance for your answer

    cha

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  2. charlottesirot commented on Aug 24, 2016

    @charlottesirot
    charlottesirot
    on Aug 24, 2016
    Author

    So just to be sure, I did:

    1. Open R
    2. run:
    > library(devtools)
>devtools::install_github("hadley/devtools", force = T)

    Everything is OK

    1. I closed R
    2. I reopened R
    3. and then:
    > library(devtools)
> install_github('Rstudio/DT', dependencies = T)
Downloading GitHub repo Rstudio/DT@master
from URL https://api.github.com/repos/Rstudio/DT/zipball/master
Installing DT
"C:/PROGRA~1/R/R-33~1.1/bin/i386/R" --no-site-file --no-environ --no-save  \
  --no-restore --quiet CMD INSTALL  \
  "C:/Users/cha/AppData/Local/Temp/Rtmp4UqfDo/devtools7c45b22c6f/rstudio-DT-25d879b"  \
  --library="C:/Users/cha/Documents/R/win-library/3.3" --install-tests 

* installing *source* package 'DT' ...
** R
** inst
** preparing package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
  there is no package called 'Rcpp'
ERROR: lazy loading failed for package 'DT'
* removing 'C:/Users/cha/Documents/R/win-library/3.3/DT'
Error: Command failed (1)

    Do I understand well ??
    Again thank you so much for your help

    Cha

  3. hadley
    added
    bugan unexpected problem or unintended behavior
    install
    on Nov 3, 2016

  4. fbreitwieser commented on Nov 18, 2016

    @fbreitwieser
    fbreitwieser
    on Nov 18, 2016

    I have the same issue on Windows (R 3.3.2 32bit), and the problem persists after restarting R.

  5. cmdcolin commented on Feb 23, 2017

    @cmdcolin
    cmdcolin
    on Feb 23, 2017

    I was seeing something that reminded me of this

    When I installed my package which lists shiny as a Depends with install_github it would produce errors about httpuv and Rcpp etc not being installed. I could try to make a minimal test case too if there is interest

    I didn't try using the latest devtools because it said it needed Rtools which seemed a little bit heavy duty

  6. jrgant commented on Apr 4, 2017

    @jrgant
    jrgant
    on Apr 4, 2017

    I'm still having this issue as well. I have tried devtools 1.12.0 and 1.12.0.9000 (went the Rtools route) in R 3.3.2 and 3.3.3. Nothing I've tried has succeeded in getting the sub-dependencies to be installed, unfortunately.

  7. jimhester
    closed this as completedon Aug 2, 2017

  8. vedatAltun commented on Mar 17, 2018

    @vedatAltun
    vedatAltun
    on Mar 17, 2018

    try to download libxml2-dev libs for Ubuntu 16.04
    sudo apt-get install libxml2-dev or sudo apt-get install libxml2
    and reinstall your package in R Studio

  9. lock commented on Sep 17, 2018

    @lock
    lockBot
    on Sep 17, 2018

    This old issue has been automatically locked. If you believe you have found a related problem, please file a new issue (with reprex) and link to this issue. https://reprex.tidyverse.org/

  10. lock
    locked and limited conversation to collaborators on Sep 17, 2018
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